SelectFdr
Filter: Select the p-values for an estimated false discovery rate.
This uses the Benjamini-Hochberg procedure. alpha is an upper bound on the expected false discovery rate.
Read more in the User Guide.
Python Reference (opens in a new tab)
Constructors
constructor()
Signature
new SelectFdr(opts?: object): SelectFdr;Parameters
| Name | Type | Description |
|---|---|---|
opts? | object | - |
opts.alpha? | number | The highest uncorrected p-value for features to keep. Default Value 0.05 |
opts.score_func? | any | Function taking two arrays X and y, and returning a pair of arrays (scores, pvalues). Default is f_classif (see below “See Also”). The default function only works with classification tasks. |
Returns
Defined in: generated/feature_selection/SelectFdr.ts:25 (opens in a new tab)
Methods
dispose()
Disposes of the underlying Python resources.
Once dispose() is called, the instance is no longer usable.
Signature
dispose(): Promise<void>;Returns
Promise<void>
Defined in: generated/feature_selection/SelectFdr.ts:94 (opens in a new tab)
fit()
Run score function on (X, y) and get the appropriate features.
Signature
fit(opts: object): Promise<any>;Parameters
| Name | Type | Description |
|---|---|---|
opts | object | - |
opts.X? | ArrayLike[] | The training input samples. |
opts.y? | ArrayLike | The target values (class labels in classification, real numbers in regression). |
Returns
Promise<any>
Defined in: generated/feature_selection/SelectFdr.ts:111 (opens in a new tab)
fit_transform()
Fit to data, then transform it.
Fits transformer to X and y with optional parameters fit\_params and returns a transformed version of X.
Signature
fit_transform(opts: object): Promise<any[]>;Parameters
| Name | Type | Description |
|---|---|---|
opts | object | - |
opts.X? | ArrayLike[] | Input samples. |
opts.fit_params? | any | Additional fit parameters. |
opts.y? | ArrayLike | Target values (undefined for unsupervised transformations). |
Returns
Promise<any[]>
Defined in: generated/feature_selection/SelectFdr.ts:153 (opens in a new tab)
get_feature_names_out()
Mask feature names according to selected features.
Signature
get_feature_names_out(opts: object): Promise<any>;Parameters
| Name | Type | Description |
|---|---|---|
opts | object | - |
opts.input_features? | any | Input features. |
Returns
Promise<any>
Defined in: generated/feature_selection/SelectFdr.ts:200 (opens in a new tab)
get_metadata_routing()
Get metadata routing of this object.
Please check User Guide on how the routing mechanism works.
Signature
get_metadata_routing(opts: object): Promise<any>;Parameters
| Name | Type | Description |
|---|---|---|
opts | object | - |
opts.routing? | any | A MetadataRequest encapsulating routing information. |
Returns
Promise<any>
Defined in: generated/feature_selection/SelectFdr.ts:238 (opens in a new tab)
get_support()
Get a mask, or integer index, of the features selected.
Signature
get_support(opts: object): Promise<any>;Parameters
| Name | Type | Description |
|---|---|---|
opts | object | - |
opts.indices? | boolean | If true, the return value will be an array of integers, rather than a boolean mask. Default Value false |
Returns
Promise<any>
Defined in: generated/feature_selection/SelectFdr.ts:273 (opens in a new tab)
init()
Initializes the underlying Python resources.
This instance is not usable until the Promise returned by init() resolves.
Signature
init(py: PythonBridge): Promise<void>;Parameters
| Name | Type |
|---|---|
py | PythonBridge |
Returns
Promise<void>
Defined in: generated/feature_selection/SelectFdr.ts:55 (opens in a new tab)
inverse_transform()
Reverse the transformation operation.
Signature
inverse_transform(opts: object): Promise<any>;Parameters
| Name | Type | Description |
|---|---|---|
opts | object | - |
opts.X? | any | The input samples. |
Returns
Promise<any>
Defined in: generated/feature_selection/SelectFdr.ts:308 (opens in a new tab)
set_output()
Set output container.
See Introducing the set_output API for an example on how to use the API.
Signature
set_output(opts: object): Promise<any>;Parameters
| Name | Type | Description |
|---|---|---|
opts | object | - |
opts.transform? | "default" | "pandas" | Configure output of transform and fit\_transform. |
Returns
Promise<any>
Defined in: generated/feature_selection/SelectFdr.ts:343 (opens in a new tab)
transform()
Reduce X to the selected features.
Signature
transform(opts: object): Promise<any>;Parameters
| Name | Type | Description |
|---|---|---|
opts | object | - |
opts.X? | any | The input samples. |
Returns
Promise<any>
Defined in: generated/feature_selection/SelectFdr.ts:376 (opens in a new tab)
Properties
_isDisposed
boolean=false
Defined in: generated/feature_selection/SelectFdr.ts:23 (opens in a new tab)
_isInitialized
boolean=false
Defined in: generated/feature_selection/SelectFdr.ts:22 (opens in a new tab)
_py
PythonBridge
Defined in: generated/feature_selection/SelectFdr.ts:21 (opens in a new tab)
id
string
Defined in: generated/feature_selection/SelectFdr.ts:18 (opens in a new tab)
opts
any
Defined in: generated/feature_selection/SelectFdr.ts:19 (opens in a new tab)
Accessors
feature_names_in_
Names of features seen during fit. Defined only when X has feature names that are all strings.
Signature
feature_names_in_(): Promise<ArrayLike>;Returns
Promise<ArrayLike>
Defined in: generated/feature_selection/SelectFdr.ts:480 (opens in a new tab)
n_features_in_
Number of features seen during fit.
Signature
n_features_in_(): Promise<number>;Returns
Promise<number>
Defined in: generated/feature_selection/SelectFdr.ts:455 (opens in a new tab)
pvalues_
p-values of feature scores.
Signature
pvalues_(): Promise<ArrayLike>;Returns
Promise<ArrayLike>
Defined in: generated/feature_selection/SelectFdr.ts:432 (opens in a new tab)
py
Signature
py(): PythonBridge;Returns
PythonBridge
Defined in: generated/feature_selection/SelectFdr.ts:42 (opens in a new tab)
Signature
py(pythonBridge: PythonBridge): void;Parameters
| Name | Type |
|---|---|
pythonBridge | PythonBridge |
Returns
void
Defined in: generated/feature_selection/SelectFdr.ts:46 (opens in a new tab)
scores_
Scores of features.
Signature
scores_(): Promise<ArrayLike>;Returns
Promise<ArrayLike>
Defined in: generated/feature_selection/SelectFdr.ts:409 (opens in a new tab)